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Chemical shifts provide not only peak identities for analyzing nuclear magnetic resonance (NMR) data, but also an important source of conformational information for studying protein structures. Curren...
Given a set P of n uncertain points on the real line, each rep-resented by its one-dimensional probability density function, we consider the problem of building data structures on P to answer range qu...
Proteins are dynamic molecules involved in virtually every chemical process in our bodies. Understanding how they flex and bend provides fundamental insights to their functions. At the atomic level, p...
Identification of proteins and their modifications via liquidchromatography-tandem mass spectrometry is an important task for the field of proteomics. However, becauseof the complexity of tandem mass ...
This paper describes the pFind 2.0 software package for peptide and protein identification via tandem mass spectrometry. Firstly, the most important feature of pFind 2.0 is that it offers amodularized...
A software package, IndexToolkit, aimed at overcoming the disadvantage of FASTA-format databases for frequent searching,is developed to utilize an indexing strategy to substantially accelerate sequenc...

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