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ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra
ADAM Analysis of Discrete Models
2011/1/5
Motivation: Many biological systems are modeled qualitatively with discrete models, such as probabilistic Boolean networks, logical models, bounded Petri nets, and agent-based models. Simulation is a ...
The algebra of the general Markov model on phylogenetic trees and networks
general Markov model phylogenetic trees
2011/1/5
It is known that the Kimura 3ST model of sequence evolution on phylogenetic trees can be extended quite naturally to arbitrary split systems. However, this extension relies heavily on mathematical pec...